A full range of options is available to travelers staying in Juneau [1], but you should make reservations well in advance for arrivals in July–August, when everything in town is sometimes booked. See the Juneau Convention and Visitors Bureau website (www.traveljuneau.com [2]) for links to many local hotels, motels, B&Bs, lodges, and resorts.
If you aren’t bringing a vehicle up on the ferry, be sure to ask whether your lodging place includes pickup; it could save you the $30 taxi fare. Add 12 percent tax to all rates listed.
Links:
[1] http://www.moon.com/destinations/alaska/southeast-alaska/juneau
[2] http://www.traveljuneau.com